Virk RK, Jayakumar J, Mendenhall IH, Moorthy M, Lam P, Linster M, Lim J, Lin C, Oon LEL, Lee HK, Koay ESC, Vijaykrishna D, Smith GJD, Su YCF (2020). Divergent evolutionary trajectories of influenza B viruses underlie their contemporaneous epidemic activity. Proceedings of the National Academy of Sciences USA 117: 619-628.
Mendenhall IH, Kerimbayev AA, Strochkov VM, Sultankulova KT, Kopeyev SK, Su YCF, Smith GJD, Oyrnbayev MB (2019). Discovery and characterization of novel bat coronavirus lineages from Kazakhstan. Viruses 11: 356.
Dovih P, Laing ED, Chen Y, Low DHW, Ansil BR, Yang X, Shi Z, Broder CC, Smith GJD, Linster M, Ramakrishnan U, Mendenhall IH (2019). Filovirus-reactive antibodies in humans and bats in Northeast India imply zoonotic spillover. PLoS Neglected Tropical Diseases 13: e0007733.
Ali M, Yaqub T, Mukhtar N, Imran M, Ghafoor A, Shahid MF, Naeem M, Iqbal M, Smith GJD, Su YCF (2019). Avian Influenza A(H9N2) Virus in Poultry Worker, Pakistan, 2015. Emerging Infectious Diseases 25: 136-139.
Laing ED, Mendenhall IH, Linster M, Low DHW, Chen Y, Yan L, Sterling SL, Borthwick S, Neves ES, Lim JSL, Skiles M, Lee BPY, Wang L, Broder CC and Smith GJD. (2018). Serologic Evidence of Fruit Bat Exposure to Filoviruses, Singapore, 2011–2016. Emgerging Infectious Diseases, 24(1), 122-126. https://dx.doi.org/10.3201/eid2401.170401.
Mendenhall IH, Borthwick S, Neves ES, Low D, Linster M, Liang B, Skiles M, Jayakumar J, Han H, Gunalan V, Lee BPY, Okahara K, Wang LF, Maurer-Stroh S, Su YCF and Smith GJD. (2017) Identification of a Lineage D Betacoronavirus in Cave Nectar Bats (Eonycteris spelaea) in Singapore and an Overview of Lineage D Reservoir Ecology in SE Asian Bats. Transbound Emerg Dis, Dec;64(6):1790-1800. doi: 10.1111/tbed.12568. Epub 2016 Sep 16.
Bahl J, Pham TT, Hill NJ, Hussein IT, Ma EJ, Easterday BC, Halpin RA, Stockwell TB, Wentworth DE, Kayali G, Krauss S, Schultz-Cherry S, Webster RG, Webby RJ, Swartz MD, Smith GJ and Runstadler JA. (2016) Ecosystem Interactions Underlie the Spread of Avian Influenza A Viruses with Pandemic Potential. PLoS Pathog, May 11;12(5):e1005620. doi: 10.1371/journal.ppat.1005620. eCollection 2016 May.
Su YC, Bahl J, Joseph U, Butt KM, Peck HA, Koay ES, Oon LL, Barr IG, Vijaykrishna D and Smith GJ. (2015) Phylodynamics of H1N1/2009 influenza reveals the transition from host adaptation to immune-driven selection. Nat Commun, Aug 6;6:7952. doi: 10.1038/ncomms8952.
Vijaykrishna D, Holmes EC, Joseph U, Fourment M, Su YCF, Halpin R, Lee RTC, Deng Y-M, Gunalan V, Lin X, Stockwell T, Fedorova NB, Zhou B, Spirason N, Kühnert D, Boškováh V, Stadler T, Costai A, Dwyer DE, Huang QS, Jennings LC, Rawlinson W, Sullivan SG, Hurt A, Maurer-Stroh S, Wentworth D, Smith GJD and Barr IG. (2015) The contrasting pyhlodynamics of human influenza B viruses. Elife. 2015 Jan 16;4:e05055. doi: 10.7554/eLife.05055.
Bahl J, Nelson MI, Chan KH, Chen R, Vijaykrishna D, Halpin RA, Stockwell TB, Lin X, Wentworth DE, Ghedin E, Guan Y, Peiris JS, Riley S, Rambaut A, Holmes EC and Smith GJ. (2011) Temporally structured metapopulation dynamics and persistence of influenza A H3N2 virus in humans. Proc Natl Acad, Sci U S A. Nov 29;108(48):19359-64. doi: 10.1073/pnas.1109314108. Epub 2011 Nov 14.
Smith GJ, Vijaykrishna D, Bahl J, Lycett SJ, Worobey M, Pybus OG, Ma SK, Cheung CL, Raghwani J, Bhatt S, Peiris JS, Guan Y and Rambaut A. (2009) Origins and evolutionary genomics of the 2009 swine-origin H1N1 influenza A epidemic. Nature, Jun 25;459(7250):1122-5. doi: 10.1038/nature08182.