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Shirin Kalimuddin and the art of diagnosis

For Assistant Professor Shirin Kalimuddin, diagnosis begins long before the lab results arrive. In the fragments of a patient’s story, in an unusual travel detail, in a clue others might overlook, she has built a career at the intersection of clinical instinct, scientific curiosity and quietly relentless persistence

By Dr Chua Li Min, Science writer

For Assistant Professor Shirin Kalimuddin, diagnosis begins long before the lab results arrive // Credit: Duke-NUS

What's your hobby? How many pets do you have? What did you do on your holiday?

In most conversations, they would pass for harmless small talk. For infectious diseases specialist Assistant Professor Shirin Kalimuddin, they can be the first clues in a case that refuses to give itself away.

A patient’s travel history. An offhand remark. A seemingly forgettable detail that turns out to matter. Over the years, Kalimuddin has built her career on listening closely, noticing what others miss, and following seemingly minor details until they reveal something far more consequential. This is crucial to her work at the Department of Infectious Diseases at the Singapore General Hospital (SGH) and the Duke-NUS Emerging Infectious Diseases Programme.

It is a kind of detective work, though not the dramatic sort popularised by Dr Gregory House in House, M.D. Kalimuddin is not swabbing kitchen sinks or rummaging through medicine cabinets. Her method is quieter, but no less exacting: ask carefully, listen deeply, and piece together what is hiding in plain sight.

That same relentless instinct has carried her to venture beyond the hospital ward and into the research lab, where she now applies the same rigour and ingenuity to understanding the host immune response to viral infections, a transition that was fully supported by one of her earliest mentors, Professor Jenny Low.

"She’s very good at making sure that the ‘diamond’ in every project shines"

Clin Assoc Prof Oh Choon Chiat

“Shirin made the right decision to go down research because I think she has the right temperament and intellectual rigour for it. I think she would have been equally successful even if she had chosen another path,” added Low.

Kalimuddin’s long-time colleague and head of the SGH Department of Infectious Department, Clinical Associate Professor Limin Wijaya agrees: “She is curious and creative and is proactive in translating ideas to outcomes. This is very important in academia.”


A dream since childhood

From a young age, Kalimuddin wanted to become a doctor.

While other kids were playing house, she was busy running a make-believe clinic, with her younger sister as her patient. “I would hook her up to all these like...fake drips, tubes and all,” said Kalimuddin, with a grin.

She hit a temporary roadblock, however, when she didn’t get into medical school in Singapore.

Undeterred, Kalimuddin applied to study overseas—and with her parents’ support, pursued medicine at King's College London.

“I think that was a blessing in disguise because the opportunity to go overseas and see a different system enabled me to become more independent and open to alternative ways of doing things,” said Kalimuddin, reflecting on her stint as a medical student and then house officer in the United Kingdom. 

When it came time to apply for residency training, Kalimuddin and her then-partner, now-husband found themselves at the crossroads.

Realising that staying meant being posted to opposite ends of the country, the pair made the pivotal decision to return home to complete their training.


Going the diagnostic route

So, in 2007, Kalimuddin touched down on home soil on National Day, a date that marked the start of her new adventure.

Her first posting upon returning was to the Department of Rheumatology at the Singapore General Hospital.

But it was a subsequent posting to the Internal Medicine department that led Kalimuddin to discover her calling in infectious diseases.

While infectious diseases existed as a niche service within the department back then, the experience treating patients with unexplained symptoms drew Kalimuddin to the field. 

“I like the diagnostic aspect of it,” she explained. “The fact that we often don’t know what’s wrong with the patient and it’s ID (infectious diseases) that comes in and puts all the pieces together—I find it really fascinating. It’s like you’re in a detective story happening in real time.” 

Cracking cases in the ID realm

Most of the patients Kalimuddin sees are “blue letters”, or referral cases who present with prolonged fevers among other symptoms. 

“There’s always this joke that the ID physician will come and summarise it all. Like if the team doesn’t know what’s going on, they will call ID,” chuckled Kalimuddin.

Because of that, her patients come from a range of specialties, from medicine to surgery.

“We need to understand a little bit about what kind of surgery they’ve had, what drug they’re on and so on,” said Kalimuddin, stressing the importance of understanding these details, which help her team in diagnosing the patient and mapping out treatment options. 

In most instances, the diagnosis does not point to an underlying sinister infection but other conditions such as cancer that cause prolonged fevers.

But there are still exceptions, like one of Kalimuddin’s earliest cases as a young medical officer: a patient who returned from the Hajj pilgrimage with a fever that had been running for several weeks.

“That’s when we found out that she’d gone on this tour and then visited a farm where they drank raw camel milk,” added Kalimuddin excitedly, emphasising the importance of taking the patients’ history. “So it’s not just where did you go, but also what did you do.

The crucial missing piece of the puzzle: camel’s milk //Credit: iStock.com / Nataliia Milko

 

Following this lead led Kalimuddin and her team to diagnose the patient and her travel companion—who was warded in another hospital—with brucellosis, a zoonotic infection that causes recurrent fever and other systemic complications. It also led to Kalimuddin’s first publication.


Not just another mystery solved

Seeking to deepen her expertise after her specialist training, Kalimuddin enrolled in the Master of Public Health programme offered by Johns Hopkins University while continuing her clinical duties.

It wasn’t long before there came another case: a sudden influx of young patients with severe Group B Streptococcus (GBS) infections.

Realising that this was out of the norm, the detective in Kalimuddin sprung to action immediately.

“I had to mobilise the whole ID community. I remember sending out emails to everyone and saying, ‘Look, we need to know all the cases.’ That was when we realised that it wasn’t just SGH. All the other hospitals were seeing it,” recalled Kalimuddin.

This collaborative effort grew bigger to involve other stakeholders—including the Ministry of Health and the National Environment Agency—when the team realised that all the patients had in fact consumed raw freshwater fish in porridge, which was subsequently linked to a hypervirulent strain of the GBS bacteria.

“We saw over 200 cases in several months. The outbreak come down quite quickly after a ban was put on eating these ready-to-eat raw fish dishes,” said Kalimuddin. “It was very eye-opening. And I like the fact that, again, it's like a mystery that we solved.”

But it wasn’t just any other case in the archives for Kalimuddin.

It was a turning point for the associate consultant who decided that she wanted to do more research.

“I realised that I enjoyed working with all the other groups very much because you learn so much. It was very multidisciplinary.”

So Kalimuddin turned to her then mentor, Low, for advice. 


Tackling invisible threats through research

At the time, Low was the only clinician-scientist in the department looking to nurture junior clinicians who were interested in research.

"I think she would have been equally successful even if she had chosen another path"

Prof Jenny Low

“We were very supportive towards her decision to embark on this path,” recalled Low.

She encouraged Kalimuddin to reach out to the Centre for Clinician-Scientist+ Development (CCSD) for further training and support.

“So we sat down together with Prof Koh Woon Puay (CCSD’s founding director) to plan what I could do. That’s when I started doing small projects,” said Kalimuddin.  

After she joined the Khoo Scholars Programme in 2015, Kalimuddin’s first project involved using positron emission tomography (PET) scans to examine disease progression in dengue patients.

Then when COVID-19 struck, Kalimuddin pivoted her efforts into research projects focused on understanding the effects of the pathogen on the immune system instead, working under the guidance of Professor Ooi Eng Eong from Duke-NUS’ EID Programme.

This turned out to be a valuable learning opportunity for Kalimuddin, who also found a mentor in Ooi.

Publishing their findings in Med, Kalimuddin and her collaborators showed that T-cells were the first immune cells to be activated after vaccination that correlated with the onset of protection in humans.

“What she found was very important in shaping our understanding of immunity to viral infections and vaccinations,” noted Low.

“I became interested in looking at cellular immunity and T-cells, which is what I do now,” added Kalimuddin. “That’s when I decided to do a PhD, with some nudging from Eng Eong.”

For Kalimuddin, that meant working under the guidance of Professor Antonio Bertoletti, the EID programme’s T-cell expert.

“On hindsight, it’s probably one of the best decisions I made. I don't regret it because of the many things that I learned during the PhD and the opportunities to collaborate,” said Kalimuddin.

Through it all, Kalimuddin’s family has remained a source of support.

“They’ve never stopped me or tried to discourage me from doing it. Although my husband has joked that he thinks I’m crazy,” added the mother of two, with a smile. 


Bringing the fight closer to home

After graduating from the Duke-NUS’ Clinical and Translational Sciences (CTS) PhD programme complete with a publication in Nature Microbiology last year, Kalimuddin’s path in research continues.

She has her sights set on tackling a pathogen closer to home: the dengue virus—a choice guided by both passion and logic. 

 

20250531 - Graduation 2025 photos (206)

Kalimuddin with CTS Programme Director, Prof Pierce Chow (first from left) and fellow collaborator and mentor, Prof Ooi Eng Eong (first from right) on graduation day // Photo credit: Duke-NUS Medical School

 

“There’s enough traction. There are enough people working on it so you can collaborate. And in Southeast Asia, it’s also where we see the highest burden of dengue,” explained Kalimuddin, who is a member of The DENgue Virology and Immunology (DENVI) group.

Now as research lead at the SGH Department of Infectious Disease, Kalimuddin also mentors the younger generation of junior clinicians who are keen on research.


CCSD kakis celebrating their successes at the recent grant call! Oh (first from left) with Kalimuddin and fellow course mate, Tan Hong Chang// Photo credit: Courtesy of Oh Choon Chiat

Her mentorship extends to colleagues from the EID programme, observed colleague and course mate from the CCSD programme Clinical Associate Professor Oh Choon Chiat.

“She will be direct and upfront with you about her feedback on your presentations and grants, but she doesn’t stop at critique. She will tell you what you can do to meet the mark. She’s very good at making sure that the ‘diamond’ in every project shines,” he added.

Kalimuddin hopes that the insights she gleans from her research will help improve the way dengue is treated, contributing to more effective, if not yet perfect, vaccines and treatment options.

“You hope that by slowly chipping away and just adding, building upon layers and layers of knowledge that eventually this will translate into better health outcomes,” she said.

It is a characteristically measured answer, but also an apt one. Much of Kalimuddin’s work, whether in the clinic or the lab, is about staying with complexity long enough for a clearer picture to emerge.

In many ways, her story reflects what clinician-scientists across the SingHealth Duke-NUS Academic Medical Centre seek to do: bridge research and clinical care in ways that ultimately change lives.

“I see it as a privilege to be able to do something like this,” she concluded. 

Not surprisingly, even the way Kalimuddin unwinds carries a faint trace of the same instinct. At the end of a long day, she often reaches for a good crime thriller. “The latest one I’ve watched is How to Get to Heaven from Belfast,” she quipped.

Some people switch off by escaping the mystery. Shirin Kalimuddin, it seems, prefers to stay with it a little longer.


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